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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015930872.1_cds_XP_016477844.1_69532
CDS Infomation

[gene=LOC107799265] [db_xref=GeneID:107799265] [protein=shaggy-related protein kinase epsilon-like] [partial=3'] [protein_id=XP_016477844.1] [location=complement(join(<8..197,528..611,747..842,946..996,1160..1300,1383..1439,1657..1731,1872..2144,2258..2317,2419..2511,2611..2871,3641..3700))] [gbkey=CDS]
Sequence

ATGAATGTCATGCGTCGCCTTAAGAGCATTGCTTCTGGACGTTCCTCCGTTTCAGATCCT
GGTGGCGATTCAAGCATAAAGAGGGTGAAGGTTGAGCAAGAAGTAGATCAAAGGGTGGTT
GGTGAAACTCAAATGGAAGAGAGATGTACAACTATAGTTCCAAAAGAGGATATGGCTTCT
ACTTCTAAGGGCACAACTACTGGAAGCACATCAACTATGGATACTAGACCAGAAAATTCG
GAGTTTGATGAGCTTCCTAAAGAAATGCATGAAATGAAAATTAAAGACGAAAAAGCTGAT
AGTCATGAGGATAATTTAAAGGATATGGAACCTGCTGTTGTTAGTGGTAATGGAACGGAA
ACTGGTCAGATAATTGTGACTACTGTGAGTGGTCGAAATGGACAACAGAAACAGACATTG
TCTTACATGGCGGAGCGCGTGGTTGGTACTGGTTCATTTGGAACTGTATTTCAGGCGAAG
TGCTTGGAAACTGGTGAATCTGTTGCTATAAAGAAAGTCTTACAAGATAGGAGATATAAG
AACAGAGAACTTCAGATTATGCGCACGCTTGATCATCCTAATGTTGTTAAACTAAGACAC
TGCTTCTATTCTACTACTGAAAAGAATGAAGTCTACCTTAACCTTGTCCTTGAATATGTT
TCTGAAACTGTTTACCGAGTTTCAAGGCACTACAGCAGAATGAACCAACACATGCCCATT
ATATATGTGCAGCTATACACATACCAGATATGTCGGGCTTTGAATTACATGCATGGTGTT
CTTGGTGTATGCCATCGTGATATTAAACCACAGAATCTTTTGGTTAATCCCCACACACAT
CAGCTAAAGCTCTGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGAGAGCCCAACATA
TCATACATTTGTTCTCGTTATTATAGGGCCCCTGAATTGATCTTTGGGGCTACGGAGTAC
ACAACTGCAATTGACATGTGGTCTGCTGGTTGTGTTATGGCTGAGCTACTTCTGGGACAG
CCTCTTTTCCCCGGAGAAAGTGGTGTTGATCAGCTGGTGGAAATCATCAAGATTTTGGGG
ACACCAACTAGAGAGGAGATTAGGTGCATGAATCCAAACTACACAGAGTTCAAGTTTCCC
CAGATCAAAGCTCACCCGTGGCACAAGATATTTCATAAAAGAATGCCTCCTGAAGCAGTA
GATCTTGTATCAAGGCTTCTTCAATATTCTCCAACTCTACGTTGTACTGCTTTGGAGGCA
TGTGCACACCCTTTCTTTGATCCTTTAAGGGAACCAAATGCTTGCTTGCCAAATGGGCGA
CCTCTGCCACCTCTTTTCAACTTTACTGCTCAAGGTGACCTTCAATTTGGTTTTTCACTT
ATGCTATCACATGATTTGATGCCTCAATCTGACTATTGTAATTCTCATGCAGAGCTCTCT
G

Peptide Sequence

PEP ID

XP_016477844.1
PEP Infomation

PREDICTED: shaggy-related protein kinase epsilon-like, partial [Nicotiana tabacum]
Sequence

MNVMRRLKSIASGRSSVSDPGGDSSIKRVKVEQEVDQRVVGETQMEERCTTIVPKEDMAS
TSKGTTTGSTSTMDTRPENSEFDELPKEMHEMKIKDEKADSHEDNLKDMEPAVVSGNGTE
TGQIIVTTVSGRNGQQKQTLSYMAERVVGTGSFGTVFQAKCLETGESVAIKKVLQDRRYK
NRELQIMRTLDHPNVVKLRHCFYSTTEKNEVYLNLVLEYVSETVYRVSRHYSRMNQHMPI
IYVQLYTYQICRALNYMHGVLGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKMLVPGEPNI
SYICSRYYRAPELIFGATEYTTAIDMWSAGCVMAELLLGQPLFPGESGVDQLVEIIKILG
TPTREEIRCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPTLRCTALEA
CAHPFFDPLREPNACLPNGRPLPPLFNFTAQGDLQFGFSLMLSHDLMPQSDYCNSHAELS

Transcript Sequence

Gene sequence data has not been registered.